Shopify to QuickBooks Desktop Enterprise
4.9/5 from 200+ reviews on QuickBooks, Amazon and Capterra
A Shopify QuickBooks Desktop Enterprise connector for payout reconciliation, POS vs. online tracking, assemblies, and Advanced Inventory sites.
Built for merchants who rely on Desktop Enterprise for stronger operational control, multi-location inventory, and cleaner balance-account reconciliation.
Using QuickBooks Desktop? See Shopify → QuickBooks Online.
Back to: all integrations | QuickBooks Desktop integrations | Shopify integrations
QuickBooks versions:
Desktop Pro, Desktop Premier, Desktop Enterprise
Shopify store locations:
US, CA
Import details
Automated Shopify Payments reconciliation
Reconcile Shopify payouts in minutes, not hours. Most integrations record sales prematurely, right when the customer pays. We do it properly: payments go to dedicated balance accounts first, and sales are only posted when you actually ship the order. Shopify Payments, PayPal, Stripe, and other gateways each get their own balance account in QuickBooks Desktop Enterprise, so your clearing accounts always match what your payment processors actually hold.
- ✔ Payment-First Recognition
- ✔ Ship-to-Revenue Accounting
- ✔ Post to dedicated balance accounts
- ✔ Support for PayPal, Stripe, and others
- ✔ Handle multi-currency transactions
Available in plans:
Professional , Enterprise
Advanced tracking
Track Shopify POS and Online separately
Separate your retail and e-commerce financials. Use QuickBooks Desktop Classes to track Shopify POS sales distinctly from your online store. Analyze profitability by sales channel and location to understand which parts of your business are performing best.
- ✔ Separate reporting for POS vs. Online
- ✔ Track sales by Shopify Location
- ✔ Class-based profitability analysis
Available in plans:
Professional , Enterprise
Advanced inventory
Handle Shopify bundles and kits
Selling bundles on Shopify? Map a single Shopify product to a QuickBooks Desktop Group or Assembly item. Entriwise correctly deducts the component inventory in QuickBooks when a bundle is sold on Shopify, keeping your COGS accurate.
- ✔ Map Shopify bundles to QB Groups
- ✔ Correct component deduction
- ✔ Support for dynamic bundles
Available in plans:
Professional , Enterprise
Inventory sites
Multi-location inventory management
Map your Shopify Locations to corresponding QuickBooks Desktop Enterprise Inventory Sites. Entriwise ensures that orders are fulfilled from the correct warehouse and that inventory updates are sent to the right Shopify location, enabling true omnichannel inventory management.
- ✔ Map Shopify Locations to QB Sites
- ✔ Location-specific inventory sync
- ✔ Support for 'Buy Online, Pick Up in Store'
Available in plans:
Professional , Enterprise
