Does Amazon Seller Central integrate with QuickBooks Online?

Yes. Entriwise connects Amazon Seller Central and QuickBooks Online so you can import Amazon settlements, fees, refunds, and inventory-related COGS without manual journal entries.

What is the best Amazon Seller Central QuickBooks Online integration?

It depends on your volume and how much detail you need. A low-volume seller can manage with Intuit's built-in connector or a settlement summary. Once you sell thousands of orders a month, use both FBA and FBM, or need COGS by SKU, choose a QBO Amazon integration that posts daily summaries, maps every fee type, tracks inventory and reconciles each payout. Entriwise is built for that job. Full comparison: Amazon QuickBooks tools compared for high-volume sellers .

How is Entriwise different from the Amazon Seller Connector by QuickBooks?

The Amazon Seller Connector by QuickBooks is Intuit's own QuickBooks Amazon seller integration, available in QuickBooks Online. According to Intuit's help documentation, it creates a sales receipt and a fee expense for each Amazon sale, assigns all sales to one generic Amazon customer and imports up to 12 months of history. Entriwise posts daily summaries or itemized documents, maps each Amazon fee type to its own item, calculates SKU-level COGS, also works with QuickBooks Desktop, and reconciles every payout through a clearing account.

Does it work with QuickBooks Desktop Enterprise?

Yes. The same Amazon imports, settlement reconciliation, and SKU-level COGS work with QuickBooks Desktop Pro, Premier, and Enterprise. Desktop Enterprise with Advanced Inventory adds inventory sites for FBA, inbound, and removal stock, plus assemblies for multipacks and bundles.

Can I connect several Amazon marketplaces or Seller Central accounts?

Yes. One Amazon seller QuickBooks integration can cover all 21 Amazon stores we support, from the US and UK to Japan and the UAE. The Standard plan includes one e-commerce channel and one sales region; Professional and Enterprise include unlimited channels and sales regions. In QuickBooks Online you can report each marketplace separately with classes or locations, and in Desktop Enterprise with inventory sites. See how to track Amazon sales by marketplace in QuickBooks Online .

How long does setup take?

Most sellers connect Amazon and QuickBooks, configure mappings and run a first import the same day. The free trial includes a full month of your own data with no credit card, so you can check the QuickBooks Online Amazon integration against real settlements before you pay. Complex SKU mapping or historical imports can take longer.

How are Amazon settlements imported into QuickBooks Online?

Entriwise imports Amazon settlement activity as clean, itemized QuickBooks documents that capture sales, refunds, fees, reimbursements, and deposits so reconciliation matches the marketplace payout.

Why is Amazon Seller Central to QuickBooks Online reconciliation difficult?

Amazon payouts combine sales, refunds, FBA fees, and adjustments from different dates, and under Amazon's DD+7 policy an order's payment and fees don't settle until seven days after delivery. A simple net-deposit import hides the detail you need for accrual accounting. Entriwise keeps those flows in dedicated balance accounts, and deferred orders stay open as invoices and bills until Amazon pays them out, so the final deposit matches without losing the underlying activity. For a worked example, see our guide to Amazon DD+7 deferred transactions .

Can I use daily summaries instead of one document per order?

Yes. Entriwise supports daily summarized imports so high-volume sellers can keep QuickBooks Online clean while still preserving the accounting detail needed for reconciliation and reporting.

Does it support Amazon FBA and seller-fulfilled orders?

Yes. FBA and seller-fulfilled (FBM) orders run through the same Amazon Seller Central QuickBooks integration, and you can tag them with different classes or locations to compare margins. For FBA, the Professional plan adds inventory adjustments and returns tracking, and Enterprise adds inbound shipments and removal orders. Enterprise also includes real-time order flow.

Can QuickBooks Online track Amazon inventory and COGS?

Yes. When your Amazon SKUs are mapped to QuickBooks items, Entriwise tracks quantities sold and refunded and uses QuickBooks costs to support SKU-level COGS and profitability reporting.

Can I connect Amazon FBA to QuickBooks Online without posting every order separately?

Yes. Entriwise is designed for Amazon FBA and FBM sellers who want daily accrual summaries instead of one QuickBooks transaction per order. You still retain fee detail, inventory movement, and settlement reconciliation without bloating QBO.

Does it support bundles or multipacks?

Yes. Many-to-one SKU mapping works on every plan, multipacks (inventory multipliers) need the Professional plan, and bundles with price allocation need the Enterprise plan.

Can I see profitability by SKU?

Yes. Entriwise combines sales, fees, actual or supplemental COGS, and additional cost logic so you can measure net profitability by Amazon SKU inside the platform.

Amazon Seller Central to QuickBooks Integration for Online & Desktop

4.9/5 from 262 customer reviews on QuickBooks, Amazon, and Capterra

Entriwise is an Amazon QuickBooks integration for sellers who need accurate books and a deposit sync. Every day it posts Amazon sales, refunds, fees, reimbursements and FBA inventory movements to QuickBooks, calculates SKU-level COGS from your QuickBooks item costs and reconciles each payout to the penny. Use it as an Amazon integration for QuickBooks Online (Plus or Advanced) or with QuickBooks Desktop Pro, Premier and Enterprise, where it also supports inventory sites and assemblies.

See the accounting workflow in our Amazon to QuickBooks Online setup guide.

Back to: all integrations | QuickBooks integrations | Amazon integrations

QuickBooks versions:

Online Plus, Online Advanced, Desktop Pro, Desktop Premier, Desktop Enterprise, Advanced Inventory

Amazon stores:

US, CA, MX, BR, UK, DE, FR, IT, ES, BE, NL, SE, PL, JP, IN, AU, SG, AE, EG, TR, SA

Amazon Seller Central to QuickBooks Integration for Online & Desktop

Accounting itemized accrual imports Inventory inc. multipacks and bundles Profitability product level analytics Reconciliation save hours of your time

What sellers actually need

Amazon Seller Central to QuickBooks is not just a deposit sync

Every two weeks another statement lands, and someone rebuilds it by hand — sales one way, fees another, refunds if there is time. It takes hours, it goes in slightly wrong, and it has to happen again in fourteen days.

Most Amazon sellers need three things at once from an Amazon and QuickBooks integration: clean daily posting, payout reconciliation, and inventory-aware COGS. If one of those breaks, QuickBooks becomes either bloated with orders or too vague to trust at month-end.

Entriwise posts native QuickBooks transactions, not journal entries: Sales Receipts in QuickBooks Online, and Sales Orders or Invoices in Desktop Enterprise. Shipments, fees, refunds and refunded fees post at least daily, and once a statement closes, Entriwise never re-enters it.

Daily accrual posting

Post Amazon sales, refunds, fees, reimbursements, and inventory movement into QuickBooks Online or Desktop on the day activity happens instead of waiting for a net payout summary.

Settlement reconciliation

Keep a clean clearing-account workflow so Amazon deposits tie out to the penny even when refunds, adjustments, and DD+7 deferred payments land on different dates.

FBA inventory and SKU-level COGS

Map Amazon SKUs to QuickBooks items so quantities sold, refunded units, FIFO-based COGS, and profitability reporting stay aligned.

If you need the step-by-step accounting flow, start with the step-by-step setup guide . If your catalog requires multi-location inventory or assemblies in the ledger, compare the QuickBooks Desktop Enterprise path .

Entriwise vs. the Amazon Seller Connector by QuickBooks

Most sellers compare three kinds of QuickBooks Amazon integration: Intuit's built-in Amazon Seller Connector by QuickBooks, settlement-summary apps that post one entry per Amazon payout, and accounting-first tools like Entriwise. The difference is what lands in your books, and when.

Requirement	Amazon Seller Connector by QuickBooks	Settlement-summary app	Entriwise
How sales post	One sales receipt plus one fee expense per Amazon sale	One summary entry per settlement	Daily summaries or one document per transaction, your choice
When entries reach QuickBooks	As each sale is confirmed	After Amazon closes the settlement, about every 14 days	Every day, on the date the activity happened
Fee detail	One fee expense per sale	Fee totals for the settlement period	Each Amazon fee type posts to its own QuickBooks item
Inventory and COGS	Matches Amazon products to QuickBooks items	Depends on the app and plan	SKU mapping, FIFO COGS from QuickBooks costs, bundles and multipacks
QuickBooks Desktop	Not supported, QuickBooks Online only	Depends on the app	Desktop Pro, Premier and Enterprise, incl. inventory sites

Replacing an Amazon to QuickBooks integration such as A2X? See our A2X alternative for Amazon sellers comparison.

Simple 5-step setup

Set up your Amazon Seller Central QuickBooks integration

Most sellers connect, map, and run a first accrual import the same day. Here is the connection and mapping workflow.

You don't need a developer to set up the QuickBooks and Amazon integration: you authorize both accounts, review the automatic mappings and run the first import yourself. If you'd rather not do it alone, our in-house CPA and advisors can go through the mapping with you on a call. Mapping takes an hour or two, and after that, imports take minutes.

Step 1 🔑

Secure Authorization

Authenticate via secure Amazon SP-API/OAuth. We never see or store your credentials.

Step 2 📊

Accounts Mapping

Classify Amazon sales, refunds, and various fee categories to your QuickBooks Chart of Accounts.

Step 3 📦

SKU Matching

Align FBA/FBM items to QuickBooks inventory and non-inventory items for automated COGS calculation.

Step 4 ⏳

Accrual Posting

Automate daily summarized imports. Transactions are posted on the exact day activity occurs.

Step 5 🎯

Reconciliation

Match payouts to the penny by routing funds through an automated clearing account workflow.

Import details

QuickBooks Online & Desktop

Daily imports

Entriwise posts on accrual principles, recording revenue the moment orders ship. Sales, refunds, fees, and reimbursements go into QuickBooks Online or Desktop as itemized documents—one per transaction, or one daily summary for high-volume stores. Schedule imports hourly or daily, or run them manually. Daily summaries matter most for FBA. An Amazon FBA QuickBooks integration that posts every order separately can add thousands of documents a month that nobody reviews, while one daily summary keeps the same totals and an audit trail back to Amazon.

✔ Daily summaries with daily imports
✔ Accrual accounting
✔ Single transaction or daily batch import

Available in plans: Online: Standard , Professional , Enterprise · Desktop: Professional , Enterprise

Item mapping

QuickBooks Online & Desktop

Mapping for charges and fees

Smart mapping categorizes Amazon charges, fees, and adjustments automatically. Each type of Amazon income and expense posts to its own QuickBooks item, so your books stay itemized with an audit trail back to the Amazon settlement report. This is where a basic Amazon QuickBooks Online integration usually falls short: referral fees, FBA fulfillment fees, storage fees and advertising charges end up in one expense line, and you can't tell what each fee type costs you.

✔ Auto-categorize Amazon charges and fees
✔ Detailed transaction logs

Available in plans: Online: Standard , Professional , Enterprise · Desktop: Professional , Enterprise

Advanced tracking

QuickBooks Online & Desktop

Customer, class and location tracking

Entriwise automatically tags all Amazon expenses with a specific QuickBooks customer, enabling detailed reporting like Profit and Loss by Customer. Further segment your data using classes—and locations in QuickBooks Online or Customer:Job in Desktop—to track performance by fulfillment channel, marketplace, or brand.

✔ Expenses booked to Amazon customer
✔ Classes and locations for fulfillment channels
✔ Customer:Job tracking for multi-brand sellers on Desktop

Available in plans: Online: Standard , Professional · Desktop: Professional , Enterprise

Inventory mapping

QuickBooks Online & Desktop

Connect Amazon products to QuickBooks inventory

Map every Amazon SKU to QuickBooks inventory or non-inventory items to track quantities sold and refunded, while COGS follows your QuickBooks inventory costs—FIFO in QuickBooks Online, Average or FIFO in Desktop Enterprise.

✔ Automatic SKU matching to QuickBooks items
✔ Map in Entriwise or by CSV upload

Available in plans: Online: Standard , Professional · Desktop: Professional , Enterprise

What syncs in each direction

An Amazon integration with QuickBooks Online or Desktop should be clear about data direction. This is what Entriwise moves:

Amazon to QuickBooks:

Sales, refunds, fees, reimbursements and advertising charges, daily or per settlement
FBA inventory adjustments and returns (Professional plan), inbound shipments and removal orders (Enterprise plan)
Amazon payouts, matched to bank deposits through a clearing account
DD+7 deferred orders as open invoices and bills that close as Amazon releases the funds (QuickBooks Online)

QuickBooks to Amazon:

Inventory quantities (Enterprise plan)

Product listings are not synced. Keep managing listings in Seller Central.

Advanced inventory

QuickBooks Online & Desktop

Bundles with smart price allocation

Selling bundles on Amazon? Map one bundle SKU to several QuickBooks Online products or a Desktop Enterprise inventory assembly. Entriwise splits the sale price across the bundle items, so each component carries its share of revenue and COGS.

✔ Bundle SKUs mapped to multiple QuickBooks items
✔ Smart price allocation across bundle items

Available in plans: Online: Enterprise · Desktop: Enterprise

Location tracking

QuickBooks Online

Segment profitability by region

While QuickBooks Online tracks inventory at a single location, Entriwise uses QBO location tags to segment sales by fulfillment channel. Track profitability by Amazon marketplace or fulfillment method (FBA vs. FBM) to see which regions and channels drive your growth.

✔ Compare FBA vs. FBM sales
✔ Enable location-based reports

Available in plans: Online: Professional

Inventory sites

QuickBooks Desktop

Inventory sites for precise inventory tracking

Use the Advanced Inventory module in QuickBooks Desktop Enterprise to replicate Amazon's logistics structure. Map specific Inventory Sites to handle FBA stock, inbound shipments, removal orders, and merchant-fulfilled inventory. You see exactly where your stock sits, and inventory is valued correctly at every fulfillment stage. If your team runs QuickBooks Desktop Enterprise, you don't have to move to QBO to get an Amazon integration with QuickBooks that tracks FBA stock by site.

✔ Sites for FBA, inbound, removal, and merchant-fulfilled
✔ Marketplace-specific site segmentation
✔ Quantity on hand per site

Available in plans: Desktop: Professional , Enterprise

Product profitability COGS

QuickBooks Online & Desktop

Actual COGS to calculate your product profitability

Analyze net profits per Amazon product using actual item costs from QuickBooks inventory—FIFO COGS in QuickBooks Online, or purchase, landed, and assembly build costs in Desktop. If you use non-inventory items, you can manually enter COGS into Entriwise to enable product profitability analytics.

✔ Use actual COGS from QuickBooks inventory
✔ Manual COGS entry for non-inventory items

Available in plans: Online: Professional · Desktop: Professional , Enterprise

Product profitability additional costs

QuickBooks Online & Desktop

Extra-COGS to record additional expenses

QuickBooks doesn't allocate indirect expenses like prep fees, labeling, or freight to individual products. Entriwise supplements QuickBooks item costs with additional expenses—calculated as fixed per-unit amounts or dynamic percentages of item cost, sales, or Amazon fees—giving you complete landed cost visibility.

✔ Per-unit additional cost allocation
✔ Dynamic percentages based on sales or fee totals

Available in plans: Online: Professional · Desktop: Professional , Enterprise

Product profitability sales fees

QuickBooks Online & Desktop

Amazon commission and FBA fees as the final cost component

See beyond QuickBooks' aggregated expense accounts with per-SKU fee allocation. Entriwise tracks exactly what Amazon charges for each product sale—referral commissions, variable closing fees, FBA pick-pack-weight fees, storage, and advertising—applying them to your per-product costs to reveal true unit economics and identify which SKUs drive real profit.

✔ SKU-level referral fee breakdown
✔ FBA service fees allocated to each sale
✔ PPC costs distributed across promoted items

Available in plans: Online: Professional · Desktop: Professional , Enterprise

Your numbers will be reconciled to the penny

Automatic reconciliation ties every import back to the payout, with no duplicates and no manual entries. Whether you process 1,000 or 1,000,000 orders per month, Entriwise imports reconcile to the penny. Many Amazon Seller Central QuickBooks Online integrations stop at importing orders. Entriwise also checks that your books match what Amazon actually paid, so the month-end close starts from a reconciled clearing account.

“Despite only selling a few SKUs on Amazon, our bookkeeper was spending hours every week reconciling the Amazon sales and expenses. This all changed once we signed up for Entriwise.”

Farid · QuickBooks App Store review

Round out the Amazon + QuickBooks path

Sellers on Amazon often add next

Integration

Amazon Seller Central + QuickBooks FAQ

Integration Setup

Does Amazon Seller Central integrate with QuickBooks Online?: Yes. Entriwise connects Amazon Seller Central and QuickBooks Online so you can import Amazon settlements, fees, refunds, and inventory-related COGS without manual journal entries.
What is the best Amazon Seller Central QuickBooks Online integration?: It depends on your volume and how much detail you need. A low-volume seller can manage with Intuit's built-in connector or a settlement summary. Once you sell thousands of orders a month, use both FBA and FBM, or need COGS by SKU, choose a QBO Amazon integration that posts daily summaries, maps every fee type, tracks inventory and reconciles each payout. Entriwise is built for that job. Full comparison: Amazon QuickBooks tools compared for high-volume sellers.
How is Entriwise different from the Amazon Seller Connector by QuickBooks?: The Amazon Seller Connector by QuickBooks is Intuit's own QuickBooks Amazon seller integration, available in QuickBooks Online. According to Intuit's help documentation, it creates a sales receipt and a fee expense for each Amazon sale, assigns all sales to one generic Amazon customer and imports up to 12 months of history. Entriwise posts daily summaries or itemized documents, maps each Amazon fee type to its own item, calculates SKU-level COGS, also works with QuickBooks Desktop, and reconciles every payout through a clearing account.
Does it work with QuickBooks Desktop Enterprise?: Yes. The same Amazon imports, settlement reconciliation, and SKU-level COGS work with QuickBooks Desktop Pro, Premier, and Enterprise. Desktop Enterprise with Advanced Inventory adds inventory sites for FBA, inbound, and removal stock, plus assemblies for multipacks and bundles.
Can I connect several Amazon marketplaces or Seller Central accounts?: Yes. One Amazon seller QuickBooks integration can cover all 21 Amazon stores we support, from the US and UK to Japan and the UAE. The Standard plan includes one e-commerce channel and one sales region; Professional and Enterprise include unlimited channels and sales regions. In QuickBooks Online you can report each marketplace separately with classes or locations, and in Desktop Enterprise with inventory sites. See how to track Amazon sales by marketplace in QuickBooks Online.
How long does setup take?: Most sellers connect Amazon and QuickBooks, configure mappings and run a first import the same day. The free trial includes a full month of your own data with no credit card, so you can check the QuickBooks Online Amazon integration against real settlements before you pay. Complex SKU mapping or historical imports can take longer.

Accounting & Reconciliation

How are Amazon settlements imported into QuickBooks Online?: Entriwise imports Amazon settlement activity as clean, itemized QuickBooks documents that capture sales, refunds, fees, reimbursements, and deposits so reconciliation matches the marketplace payout.
Why is Amazon Seller Central to QuickBooks Online reconciliation difficult?: Amazon payouts combine sales, refunds, FBA fees, and adjustments from different dates, and under Amazon's DD+7 policy an order's payment and fees don't settle until seven days after delivery. A simple net-deposit import hides the detail you need for accrual accounting. Entriwise keeps those flows in dedicated balance accounts, and deferred orders stay open as invoices and bills until Amazon pays them out, so the final deposit matches without losing the underlying activity. For a worked example, see our guide to Amazon DD+7 deferred transactions.
Can I use daily summaries instead of one document per order?: Yes. Entriwise supports daily summarized imports so high-volume sellers can keep QuickBooks Online clean while still preserving the accounting detail needed for reconciliation and reporting.
Does it support Amazon FBA and seller-fulfilled orders?: Yes. FBA and seller-fulfilled (FBM) orders run through the same Amazon Seller Central QuickBooks integration, and you can tag them with different classes or locations to compare margins. For FBA, the Professional plan adds inventory adjustments and returns tracking, and Enterprise adds inbound shipments and removal orders. Enterprise also includes real-time order flow.

Inventory & Profitability

Can QuickBooks Online track Amazon inventory and COGS?: Yes. When your Amazon SKUs are mapped to QuickBooks items, Entriwise tracks quantities sold and refunded and uses QuickBooks costs to support SKU-level COGS and profitability reporting.
Can I connect Amazon FBA to QuickBooks Online without posting every order separately?: Yes. Entriwise is designed for Amazon FBA and FBM sellers who want daily accrual summaries instead of one QuickBooks transaction per order. You still retain fee detail, inventory movement, and settlement reconciliation without bloating QBO.
Does it support bundles or multipacks?: Yes. Many-to-one SKU mapping works on every plan, multipacks (inventory multipliers) need the Professional plan, and bundles with price allocation need the Enterprise plan.
Can I see profitability by SKU?: Yes. Entriwise combines sales, fees, actual or supplemental COGS, and additional cost logic so you can measure net profitability by Amazon SKU inside the platform.

Try it on your own data, or talk to our in-house CPA and advisors

They understand e-commerce accounting.

Together we will find a solution that works for your company and gets you up and running quickly, with less disruption to your business.

Start Free Trial

A full month of your own data, no credit card required.

Amazon Seller Central to QuickBooks Integration for Online & Desktop