Amazon Seller Central QuickBooks Online Integration

Connect Amazon Seller Central to QuickBooks Online with daily accrual posting, settlement reconciliation, inventory sync, and SKU-level COGS.

Built for FBA and FBM sellers who need clean accrual accounting, accurate deposits, and profitability reporting directly inside QuickBooks Online.

See the accounting workflow in our Amazon to QuickBooks Online integration guide.

Using QuickBooks Desktop? See Amazon → QuickBooks Desktop.

Back to: all integrations | Amazon integrations | QuickBooks Online integrations

QuickBooks versions:
Online Plus, Online Advanced
Amazon stores:
US, CA, MX, BR, UK, DE, FR, IT, ES, BE, NL, SE, PL, JP, IN, AU, SG, AE, EG, TR, SA

What buyers actually need

Amazon Seller Central to QuickBooks Online is not just a deposit sync

Most sellers searching this term need three things at once: clean daily posting, payout reconciliation, and inventory-aware COGS. If one of those breaks, QuickBooks becomes either bloated with orders or too vague to trust at month-end.

Daily accrual posting

Post Amazon sales, refunds, fees, reimbursements, and inventory movement into QuickBooks Online on the day activity happens instead of waiting for a net payout summary.

Settlement reconciliation

Keep a clean clearing-account workflow so Amazon deposits tie out to the penny even when FBA fees, adjustments, and reserve activity hit on different dates.

FBA inventory and SKU-level COGS

Map Amazon SKUs to QuickBooks items so quantities sold, refunded units, FIFO-based COGS, and profitability reporting stay aligned.

If you need the step-by-step accounting flow, start with the long-form implementation guide . If your catalog requires multi-location inventory or assemblies in the ledger, compare the QuickBooks Desktop Enterprise path .

Import details Daily imports

Entriwise streamlines your accounting with daily summarized imports based on accrual principles, recording revenue the moment orders ship. It captures every aspect of your Amazon business—sales, refunds, fees, and reimbursements—and imports them into QuickBooks Online as clean, fully itemized daily documents.
  • ✔ Daily summaries with daily imports
  • ✔ Accrual accounting
Available in plans: Lite , Standard , Professional , Enterprise

Item mapping Mapping for charges and fees

Simplify your financial management with smart mapping that automatically categorizes Amazon charges, fees, and adjustments. By mapping Amazon income and expenses directly to your QuickBooks Online items, Entriwise ensures precise, itemized accounting, providing the clarity needed for informed business decisions.
  • ✔ Auto-categorize Amazon charges and fees
  • ✔ Detailed transaction logs
Available in plans: Lite , Standard , Professional , Enterprise

Advanced tracking Customer, class and location tracking

Entriwise automatically tags all Amazon expenses with a specific QuickBooks customer, enabling detailed reporting like Profit and Loss by Customer. Further segment your data using QuickBooks Online classes and locations to track performance by fulfillment channel, giving you clear visibility into your revenue sources.
  • ✔ Expenses booked to Amazon customer
  • ✔ Classes and locations for fulfillment channels
Available in plans: Lite , Standard , Professional

Inventory mapping Connect Amazon products to QuickBooks Online inventory

Map every Amazon SKU to QuickBooks inventory or non-inventory items to track quantities sold and refunded, while automatically calculating COGS using the FIFO method.
  • ✔ Automatic SKU matching to QBO products
  • ✔ Webapp or CSV based mapping
Available in plans: Standard , Professional

Advanced inventory Use bundles, many-to-1 mapping for advanced inventory integration

For sellers managing complex inventory such as multipacks or bundles, Entriwise offers many-to-1 mapping and support for complex bundle creation.
  • ✔ Bundle SKUs mapped to multiple QBO products
  • ✔ Smart price allocation for multi-item packs
Available in plans: Professional

Location tracking Segment Profitability by Region

While QuickBooks Online tracks inventory at a single location, Entriwise uses QBO location tags to segment sales by fulfillment channel. Track profitability by Amazon marketplace or fulfillment method (FBA vs. FBM) to identify exactly which regions and channels are driving your growth.
  • ✔ Compare FBA vs. FBM sales
  • ✔ Enable location-based reports
Available in plans: Professional

Product profitability COGS Actual COGS to calculate your product profitability

Analyze net profits per Amazon product using FIFO COGS from QBO inventory. If you use non-inventory items, you can manually enter COGS into Entriwise to enable product profitability analytics.
  • ✔ Use FIFO COGS from QBO
  • ✔ Manual COGS entry for non-inventory items
Available in plans: Professional

Product profitability additional costs Extra-COGS to record additional expenses

QuickBooks Online's simplified expense tracking lacks native landed cost support. Entriwise supplements QBO item costs with additional expenses—calculated as fixed per-unit amounts or dynamic percentages—giving you complete landed cost visibility.
  • ✔ Per-unit additional cost allocation
  • ✔ Dynamic percentages based on sales or fee totals
Available in plans: Professional

Product profitability sales fees Amazon commission and FBA fees as the final cost component

See beyond QuickBooks Online's aggregated expense accounts with per-SKU fee allocation. Entriwise tracks exactly what Amazon charges for each product sale—referral commissions, variable closing fees, and FBA pick-pack-weight fees—applying them to your per-product costs to reveal true unit economics and identify which SKUs drive real profit.
  • ✔ SKU-level referral fee breakdown
  • ✔ FBA service fees allocated to each sale
  • ✔ PPC costs distributed across promoted items
Available in plans: Professional

Your numbers will be reconciled to the penny!

Our unique automatic reconciliation algorithm guarantees 100% correct imports. Whether you process 1,000 or 1,000,000 orders per month, Entriwise imports will reconcile to the penny.

Entriwise app screenshot

Round out the Amazon + QBO path

Keep this commercial page connected to the educational guides and adjacent solution pages that strengthen topical authority.

Deepen the Amazon + QuickBooks workflow

Solution

Accounting automation

Understand how Entriwise keeps ecommerce accounting clean with accrual posting, mapping, and reconciliation.

Solution

Inventory integration

Connect SKU mapping, stock movement tracking, and inventory sync back to your accounting system.

Solution

Profitability analytics

See how actual COGS, fees, and marketplace expenses roll up into SKU-level profitability reporting.

Recommended reading

Guide

Amazon + QuickBooks Online guide

Read the long-form guide covering daily summaries, reconciliation, inventory, and profitability for Amazon sellers.

Comparison

QuickBooks Online vs Desktop Enterprise

Compare the two QuickBooks paths for Amazon sellers who need the right blend of accessibility and inventory depth.

Guide

Amazon + NetSuite guide

Read the long-form guide covering settlement accounting, native transactions, inventory, and SKU profitability in NetSuite.

Amazon Seller Central + QuickBooks Online FAQ

Integration Setup

Does Amazon Seller Central integrate with QuickBooks Online?
Yes. Entriwise connects Amazon Seller Central and QuickBooks Online so you can import Amazon settlements, fees, refunds, and inventory-related COGS without manual journal entries.
What is the best Amazon Seller Central QuickBooks Online integration?
For sellers who need accrual accounting, inventory mapping, and SKU-level profitability in QuickBooks Online, Entriwise is built specifically for Amazon workflows including both FBA and seller-fulfilled orders.
How long does setup take?
Most sellers can connect Amazon and QuickBooks Online, configure mappings, and run a first import the same day. Complex SKU mapping or historical imports can take longer.

Accounting & Reconciliation

How are Amazon settlements imported into QuickBooks Online?
Entriwise imports Amazon settlement activity as clean, itemized QuickBooks documents that capture sales, refunds, fees, reimbursements, and deposits so reconciliation matches the marketplace payout.
Why is Amazon Seller Central to QuickBooks Online reconciliation difficult?
Amazon payouts combine sales, refunds, FBA fees, reserves, and adjustments across different dates, so a simple net-deposit import hides the detail you need for accrual accounting. Entriwise keeps those flows in dedicated balance accounts so the final deposit matches without losing the underlying activity.
Can I use daily summaries instead of one document per order?
Yes. Entriwise supports daily summarized imports so high-volume sellers can keep QuickBooks Online clean while still preserving the accounting detail needed for reconciliation and reporting.
Does it support Amazon FBA and seller-fulfilled orders?
Yes. The integration supports both FBA and seller-fulfilled workflows, including the segmentation needed to compare fulfillment performance in reporting.

Inventory & Profitability

Can QuickBooks Online track Amazon inventory and COGS?
Yes. When your Amazon SKUs are mapped to QuickBooks items, Entriwise tracks quantities sold and refunded and uses QuickBooks costs to support SKU-level COGS and profitability reporting.
Can I connect Amazon FBA to QuickBooks Online without posting every order separately?
Yes. Entriwise is designed for Amazon FBA and FBM sellers who want daily accrual summaries instead of one QuickBooks transaction per order. You still retain fee detail, inventory movement, and settlement reconciliation without bloating QBO.
Does it support bundles or multipacks?
Yes. Professional plans support advanced mapping for bundles, multipacks, and many-to-one SKU relationships so Amazon listings can map correctly to QuickBooks products.
Can I see profitability by SKU?
Yes. Entriwise combines sales, fees, actual or supplemental COGS, and additional cost logic so you can measure net profitability by Amazon SKU inside the platform.

Looking for something else? Talk to our in-house CPA and advisors

professionals who understand e-commerce needs.

Together we will find a solution that works exactly for your company, allows up and running quickly, with less disruption to your business.