Connect Shopify and Shopify Plus to Your Accounting ERP

Automate Shopify accounting across QuickBooks Online, QuickBooks Desktop, and NetSuite—orders, inventory, Shopify Payments payouts, non-Shopify payment gateway (PayPal/Stripe/etc), refunds, chargebacks, gift cards, and Shopify Payments payout reconciliation.

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Supported ERP Integrations

Select your accounting software to see specific features and pricing for Shopify.

Shopify QuickBooks Online Integration

Automated cloud accounting for Shopify merchants.

Shopify QuickBooks Online Integration →

Shopify QuickBooks Desktop Integration

Enterprise-grade desktop accounting for Shopify.

Shopify QuickBooks Desktop Integration →

Shopify NetSuite Integration

Advanced ERP automation for growing Shopify brands.

Shopify NetSuite Integration →

What this Shopify integration does

Entriwise turns Shopify activity into clean accounting records in your ERP. Depending on your system, you can import orders (including Shopify POS), handle gift card accounting, map gateway fees, refunds and chargebacks, sync inventory across Shopify Locations, and reconcile Shopify Payments payouts to bank deposits.

Shopify Payments payouts bundle many orders, refunds, chargebacks, and processing fees into a single deposit and can lag the order date—creating a statement date mismatch at month-end. Entriwise uses dedicated balance/clearing accounts and detailed mappings so payouts reconcile cleanly.

QuickBooks Online

Transaction imports, inventory sync (Online + POS), and profitability.

Payment-first recognition with ship-to-revenue accounting
Transaction-level imports for sales, refunds, and fees
Track Shopify POS vs Online with classes and locations
Inventory mapping, bundles/kits, and location-based reporting
Track Shopify Payments and gateway fees (PayPal/Stripe) per order

Explore QuickBooks Online integration →

QuickBooks Desktop

Payout reconciliation and enterprise inventory workflows.

Reconcile Shopify payouts using dedicated balance accounts per gateway
Class tracking for Shopify POS vs Online sales
Bundles/kits mapped to Groups or Assemblies
Inventory Sites for multi-location fulfillment
Supports Shopify Payments, PayPal, Stripe, and multi-currency

Explore QuickBooks Desktop integration →

NetSuite

Order-to-cash automation with payouts reconciliation.

Create Sales Orders and capture payments immediately
Sync fulfillments and tracking numbers back to Shopify
Automate invoices and payment application
Map processing fees, refunds, and chargebacks
Reconcile Shopify Payments and gateways to bank deposits

Explore NetSuite integration →

Global Shopify Integration

Entriwise supports Shopify and Shopify Plus across major marketplaces, ensuring seamless reconciliation of sales, fees and payouts.

Shopify store locations

US, CA

Sync

Automatic Inventory Sync

Fees

Capture All Shopify Fees & Payouts

Common Shopify Accounting Challenges

Payment Gateway Reconciliation

Reconciling deposits from Shopify Payments, PayPal, and others against orders is time-consuming

Gift Card Accounting

Properly tracking gift card liabilities and redemptions is often overlooked

Multi-Location Inventory

Managing stock levels across multiple warehouses and POS locations requires precise synchronization

Imports can be initiated manually and scheduled to run automatically and can be run daily or once per statement cycle.
Entriwise offers four plans to cover all your needs in accounting for Shopify sellers' activity. Pick the best one

How it works

Get started in minutes, not hours

Grant Entriwise access to your Shopify accounts and start importing transaction in a matter of minutes. No installation is required.

Import 1 month for free
Free 1-on-1 onboarding
No time limits on free trial
No payment details required

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